SubtiBank SubtiBank
ycgQ [2019-06-18 11:51:30]
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ycgQ [2019-06-18 11:51:30]

unknown
locus
BSU03240
pI
6.76
mw
33.06 kDa
protein length
285 aa Sequence Blast
gene length
858 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    349,996 350,853

    The protein

    Protein family

  • UPF0703 family (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]-[gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV]: sigma factor, [pubmed|], in [regulon|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV regulon]

    • regulation

  • expression is reduced in a [[SigV]] mutant [Pubmed|21926231]
    • view in new tab

    genes
    [gene|1AA67AD33622538F7BAD64B54FAE6FD8103BF9BE|ycgS]-[gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]-[gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B995 (ycgQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1994 NBRP B. subtilis, Japan]
  • BKE03240 ([gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03240 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCAATCACCCCTTTACC, downstream forward: _UP4_TAAGTGAAGACGAAACCAGT
  • BKK03240 ([gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03240 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCAATCACCCCTTTACC, downstream forward: _UP4_TAAGTGAAGACGAAACCAGT

    • References

  • 18179421